HPVomics

Predicted highly potential siRNAs (HR-HPVs)

S.No.	HPV type	HPV target region	Start position	End position	Sense	Antisense	Inhibition (%)	Off-target (seed)
1	HPV66	E1^E4	213	231	gacatcagtaacaacgcca	tggcgttgttactgatgtc	53.84	26
2	HPV66	E1^E4	177	195	agagagtcctacgcacact	agtgtgcgtaggactctct	53.38	26
3	HPV66	E1^E4	230	248	caacagtagaagtccacgt	acgtggacttctactgttg	52.64	28
4	HPV66	E1^E4	175	193	ccagagagtcctacgcaca	tgtgcgtaggactctctgg	52.42	9
5	HPV66	E1^E4	230	248	caacagtagaagtccacgt	acgtggacttctactgttg	52.64	28
6	HPV66	E1^E4	175	193	ccagagagtcctacgcaca	tgtgcgtaggactctctgg	52.42	9
7	HPV66	E1^E4	45	63	gagactgttaacgaataca	tgtattcgttaacagtctc	50.67	7
8	HPV66	E1^E4	16	34	gtacctgtagatacaacgt	acgttgtatctacaggtac	50.44	15
9	HPV66	E1^E4	41	59	tgttgagactgttaacgaa	ttcgttaacagtctcaaca	50.38	6
10	HPV66	E1^E4	214	232	acatcagtaacaacgccaa	ttggcgttgttactgatgt	50.3	26
11	HPV66	E1^E4	42	60	gttgagactgttaacgaat	attcgttaacagtctcaac	50.11	6
12	HPV73	E1^E4	12	30	agcgcctgtgaagtatcca	tggatacttcacaggcgct	52.16	47
13	HPV73	E1^E4	153	171	ctggattgtttgcataacc	ggttatgcaaacaatccag	52.07	35
14	HPV73	E1^E4	124	142	aaagacagtgtgactcgga	tccgagtcacactgtcttt	50.7	21
15	HPV58	E1^E4	126	144	gacaacacccagtactcca	tggagtactgggtgttgtc	56.59	38
16	HPV58	E1^E4	137	155	gtactccacaaagtataca	tgtatactttgtggagtac	50.43	44
17	HPV58	E1^E4	63	81	gccaccaacaacgaaagta	tactttcgttgttggtggc	50.38	9
18	HPV58	E1^E4	222	240	gggcggaacgtgtgtagtt	aactacacacgttccgccc	50.17	46
19	HPV16	E1^E4	16	34	gcagcaacgaagtatcctc	gaggatacttcgttgctgc	55.77	50
20	HPV16	E1^E4	261	279	agtaacactacacccatag	ctatgggtgtagtgttact	53.73	45
21	HPV16	E1^E4	258	276	aatagtaacactacaccca	tgggtgtagtgttactatt	53.41	35
22	HPV16	E1^E4	113	131	aacacagacgactatccag	ctggatagtcgtctgtgtt	52.75	44
23	HPV16	E1^E4	113	131	aacacagacgactatccag	ctggatagtcgtctgtgtt	52.75	44
24	HPV16	E1^E4	112	130	aaacacagacgactatcca	tggatagtcgtctgtgttt	51.13	28
25	HPV16	E1^E4	120	138	acgactatccagcgaccaa	ttggtcgctggatagtcgt	50.86	13
26	HPV31	E1^E4	274	292	tcagttgtcctgcaactac	gtagttgcaggacaactga	54.61	39
27	HPV31	E1^E4	41	59	gattgttacaaagctacca	tggtagctttgtaacaatc	50.89	47
28	HPV31	E1^E4	266	284	aagggctgtcagttgtcct	aggacaactgacagccctt	50.75	39
29	HPV31	E1^E4	66	84	aacaacaccaccacatcga	tcgatgtggtggtgttgtt	50.35	28
30	HPV31	E1^E4	222	240	gtcaactgtggggttatca	tgataaccccacagttgac	50.31	47
31	HPV33	E1^E4	167	185	caatagaacagcacgtact	agtacgtgctgttctattg	61.27	17
32	HPV33	E1^E4	165	183	gacaatagaacagcacgta	tacgtgctgttctattgtc	56.23	24
33	HPV33	E1^E4	175	193	cagcacgtactgcaactaa	ttagttgcagtacgtgctg	55.34	39
34	HPV33	E1^E4	164	182	ggacaatagaacagcacgt	acgtgctgttctattgtcc	54.55	44
35	HPV33	E1^E4	166	184	acaatagaacagcacgtac	gtacgtgctgttctattgt	53.89	5
36	HPV33	E1^E4	169	187	atagaacagcacgtactgc	gcagtacgtgctgttctat	52.42	15
37	HPV33	E1^E4	169	187	atagaacagcacgtactgc	gcagtacgtgctgttctat	52.42	15
38	HPV33	E1^E4	207	225	cagcggactgtgtgtagtt	aactacacacagtccgctg	51.77	46
39	HPV33	E1^E4	199	217	caaacaagcagcggactgt	acagtccgctgcttgtttg	51.09	18
40	HPV33	E1^E4	74	92	accacaagcagcggccaaa	tttggccgctgcttgtggt	50.79	26
41	HPV33	E1^E4	218	236	gtgtagttctaacgttgca	tgcaacgttagaactacac	50.28	30
42	HPV33	E1^E4	209	227	gcggactgtgtgtagttct	agaactacacacagtccgc	50.15	48
43	HPV51	E1^E4	244	262	gtgcaactcagactgcgtt	aacgcagtctgagttgcac	55.32	19
44	HPV51	E1^E4	235	253	ggcaccaaagtgcaactca	tgagttgcactttggtgcc	53.6	42
45	HPV51	E1^E4	246	264	gcaactcagactgcgttta	taaacgcagtctgagttgc	52.53	22
46	HPV51	E1^E4	246	264	gcaactcagactgcgttta	taaacgcagtctgagttgc	52.53	22
47	HPV51	E1^E4	57	75	ctatcaaacaccccaacga	tcgttggggtgtttgatag	52.24	24
48	HPV51	E1^E4	247	265	caactcagactgcgtttat	ataaacgcagtctgagttg	52.02	19
49	HPV51	E1^E4	59	77	atcaaacaccccaacgacc	ggtcgttggggtgtttgat	50.75	10
50	HPV51	E1^E4	60	78	tcaaacaccccaacgacca	tggtcgttggggtgtttga	50.69	15
51	HPV51	E1^E4	245	263	tgcaactcagactgcgttt	aaacgcagtctgagttgca	50.47	35
52	HPV51	E1^E4	58	76	tatcaaacaccccaacgac	gtcgttggggtgtttgata	50.34	16
53	HPV39	E1^E4	234	252	aacacaagacggtacctca	tgaggtaccgtcttgtgtt	56.42	27
54	HPV39	E1^E4	248	266	cctcagttgtggtaacact	agtgttaccacaactgagg	55.56	47
55	HPV39	E1^E4	245	263	gtacctcagttgtggtaac	gttaccacaactgaggtac	54.62	43
56	HPV39	E1^E4	77	95	gacccattccaccgcaaca	tgttgcggtggaatgggtc	53.62	17
57	HPV39	E1^E4	230	248	ccacaacacaagacggtac	gtaccgtcttgtgttgtgg	53.02	3
58	HPV39	E1^E4	229	247	gccacaacacaagacggta	taccgtcttgtgttgtggc	52.95	27
59	HPV39	E1^E4	256	274	gtggtaacactacgcctat	ataggcgtagtgttaccac	52.48	19
60	HPV39	E1^E4	230	248	ccacaacacaagacggtac	gtaccgtcttgtgttgtgg	53.02	3
61	HPV39	E1^E4	229	247	gccacaacacaagacggta	taccgtcttgtgttgtggc	52.95	27
62	HPV39	E1^E4	256	274	gtggtaacactacgcctat	ataggcgtagtgttaccac	52.48	19
63	HPV39	E1^E4	232	250	acaacacaagacggtacct	aggtaccgtcttgtgttgt	52.21	23
64	HPV39	E1^E4	60	78	ttatcaaacaccaccgcga	tcgcggtggtgtttgataa	52.03	20
65	HPV39	E1^E4	12	30	tgaagtaccagtgacggat	atccgtcactggtacttca	51.37	18
66	HPV39	E1^E4	11	29	gtgaagtaccagtgacgga	tccgtcactggtacttcac	51.01	19
67	HPV39	E1^E4	13	31	gaagtaccagtgacggatc	gatccgtcactggtacttc	51	9
68	HPV39	E1^E4	78	96	acccattccaccgcaacaa	ttgttgcggtggaatgggt	50.81	11
69	HPV39	E1^E4	257	275	tggtaacactacgcctata	tataggcgtagtgttacca	50.57	17
70	HPV39	E1^E4	231	249	cacaacacaagacggtacc	ggtaccgtcttgtgttgtg	50.43	10
71	HPV39	E1^E4	75	93	gcgacccattccaccgcaa	ttgcggtggaatgggtcgc	50.13	42
72	HPV35	E1^E4	16	34	gcagcacagaactatccac	gtggatagttctgtgctgc	57.94	44
73	HPV35	E1^E4	246	264	gaccggtgtggtagttgta	tacaactaccacaccggtc	56.16	47
74	HPV35	E1^E4	15	33	agcagcacagaactatcca	tggatagttctgtgctgct	55.03	28
75	HPV35	E1^E4	60	78	gcctacaacaccaccgaga	tctcggtggtgttgtaggc	54.72	36
76	HPV35	E1^E4	244	262	aagaccggtgtggtagttg	caactaccacaccggtctt	53.8	47
77	HPV35	E1^E4	251	269	gtgtggtagttgtagtaca	tgtactacaactaccacac	53.35	20
78	HPV35	E1^E4	58	76	acgcctacaacaccaccga	tcggtggtgttgtaggcgt	53.1	19
79	HPV35	E1^E4	58	76	acgcctacaacaccaccga	tcggtggtgttgtaggcgt	53.1	19
80	HPV35	E1^E4	161	179	ctacaaccccaccaagcga	tcgcttggtggggttgtag	51.23	30
81	HPV35	E1^E4	163	181	acaaccccaccaagcgagt	actcgcttggtggggttgt	51.11	24
82	HPV35	E1^E4	14	32	cagcagcacagaactatcc	ggatagttctgtgctgctg	50.04	37
83	HPV45	E1^E4	40	58	ctactcagattgttagaca	tgtctaacaatctgagtag	53.74	31
84	HPV45	E1^E4	12	30	agaagtaccagtgacgaca	tgtcgtcactggtacttct	53.33	18
85	HPV45	E1^E4	253	271	gtggtaacactacgcctat	ataggcgtagtgttaccac	52.48	19
86	HPV45	E1^E4	253	271	gtggtaacactacgcctat	ataggcgtagtgttaccac	52.48	19
87	HPV45	E1^E4	133	151	ctactaagcgacctagaca	tgtctaggtcgcttagtag	51.93	46
88	HPV45	E1^E4	254	272	tggtaacactacgcctata	tataggcgtagtgttacca	50.57	17
89	HPV45	E1^E4	52	70	ttagacagctacaacacgc	gcgtgttgtagctgtctaa	50.44	17
90	HPV45	E1^E4	10	28	ccagaagtaccagtgacga	tcgtcactggtacttctgg	50.33	19
91	HPV45	E1^E4	183	201	gtcaacacccacgtgcaca	tgtgcacgtgggtgttgac	50.19	25
92	HPV45	E1^E4	252	270	agtggtaacactacgccta	taggcgtagtgttaccact	50.13	11
93	HPV52	E1^E4	44	62	tgtccacctatgcaccgaa	ttcggtgcataggtggaca	51.92	20
94	HPV52	E1^E4	45	63	gtccacctatgcaccgaaa	tttcggtgcataggtggac	50.61	21
95	HPV52	E1^E4	111	129	caaccaccacagaaacgac	gtcgtttctgtggtggttg	50.44	35
96	HPV56	E1^E4	273	291	cctggtgataagactacgc	gcgtagtcttatcaccagg	51.62	14
97	HPV56	E1^E4	16	34	gtacctgtagatacaacgt	acgttgtatctacaggtac	50.44	15
98	HPV56	E1^E4	175	193	ccagagagtcccacgcaaa	tttgcgtgggactctctgg	50.14	9
99	HPV59	E1^E4	52	70	ctgagcaactatcataccc	gggtatgatagttgctcag	58.78	47
100	HPV59	E1^E4	251	269	catcccttgcagtaacact	agtgttactgcaagggatg	58.6	47
101	HPV59	E1^E4	259	277	gcagtaacactacgcctat	ataggcgtagtgttactgc	58.49	19
102	HPV59	E1^E4	53	71	tgagcaactatcatacccc	ggggtatgatagttgctca	57.46	48
103	HPV59	E1^E4	45	63	ggatcttctgagcaactat	atagttgctcagaagatcc	55.91	39
104	HPV59	E1^E4	257	275	ttgcagtaacactacgcct	aggcgtagtgttactgcaa	55.22	22
105	HPV59	E1^E4	258	276	tgcagtaacactacgccta	taggcgtagtgttactgca	54.95	11
106	HPV59	E1^E4	256	274	cttgcagtaacactacgcc	ggcgtagtgttactgcaag	54.77	9
107	HPV59	E1^E4	260	278	cagtaacactacgcctata	tataggcgtagtgttactg	54.42	17
108	HPV59	E1^E4	255	273	ccttgcagtaacactacgc	gcgtagtgttactgcaagg	54.16	9
109	HPV59	E1^E4	51	69	tctgagcaactatcatacc	ggtatgatagttgctcaga	52.73	35
110	HPV59	E1^E4	21	39	agtgacgagcaagtatcca	tggatacttgctcgtcact	52.37	47
111	HPV59	E1^E4	51	69	tctgagcaactatcatacc	ggtatgatagttgctcaga	52.73	35
112	HPV59	E1^E4	21	39	agtgacgagcaagtatcca	tggatacttgctcgtcact	52.37	47
113	HPV59	E1^E4	12	30	ggaagtaccagtgacgagc	gctcgtcactggtacttcc	51.83	20
114	HPV59	E1^E4	13	31	gaagtaccagtgacgagca	tgctcgtcactggtacttc	51.8	20
115	HPV59	E1^E4	15	33	agtaccagtgacgagcaag	cttgctcgtcactggtact	51.28	14
116	HPV59	E1^E4	14	32	aagtaccagtgacgagcaa	ttgctcgtcactggtactt	50.18	22
117	HPV18	E1^E4	40	58	ctactcagcttgttaaaca	tgtttaacaagctgagtag	53.48	46
118	HPV18	E1^E4	12	30	agaagtaccagtgacgaca	tgtcgtcactggtacttct	53.33	18
119	HPV18	E1^E4	196	214	ttctcggtgcagctacacc	ggtgtagctgcaccgagaa	52.92	36
120	HPV18	E1^E4	247	265	gtggtaacactacgcctat	ataggcgtagtgttaccac	52.48	19
121	HPV18	E1^E4	196	214	ttctcggtgcagctacacc	ggtgtagctgcaccgagaa	52.92	36
122	HPV18	E1^E4	247	265	gtggtaacactacgcctat	ataggcgtagtgttaccac	52.48	19
123	HPV18	E1^E4	248	266	tggtaacactacgcctata	tataggcgtagtgttacca	50.57	17
124	HPV18	E1^E4	10	28	ccagaagtaccagtgacga	tcgtcactggtacttctgg	50.33	19
125	HPV18	E1^E4	246	264	agtggtaacactacgccta	taggcgtagtgttaccact	50.13	11
126	HPV82	E1^E4	238	256	ggcacctcagtgcaactaa	ttagttgcactgaggtgcc	60.15	39
127	HPV82	E1^E4	3	21	ggacagtgaagtacctaca	tgtaggtacttcactgtcc	55.12	46
128	HPV82	E1^E4	2	20	tggacagtgaagtacctac	gtaggtacttcactgtcca	52.96	25
129	HPV82	E1^E4	45	63	actgttgaacagctatcga	tcgatagctgttcaacagt	52.96	10
130	HPV82	E1^E4	113	131	ccagacaccacaacaacga	tcgttgttgtggtgtctgg	52.56	23
131	HPV82	E1^E4	2	20	tggacagtgaagtacctac	gtaggtacttcactgtcca	52.96	25
132	HPV82	E1^E4	45	63	actgttgaacagctatcga	tcgatagctgttcaacagt	52.96	10
133	HPV82	E1^E4	113	131	ccagacaccacaacaacga	tcgttgttgtggtgtctgg	52.56	23
134	HPV82	E1^E4	46	64	ctgttgaacagctatcgaa	ttcgatagctgttcaacag	51.83	16
135	HPV82	E1^E4	73	91	cgaccaatacctattccgc	gcggaataggtattggtcg	50.89	15
136	HPV82	E1^E4	74	92	gaccaatacctattccgcc	ggcggaataggtattggtc	50.52	18
137	HPV82	E1^E4	114	132	cagacaccacaacaacgaa	ttcgttgttgtggtgtctg	50.33	12
138	HPV68	E1^E4	5	23	ccaattgtgaagtaccact	agtggtacttcacaattgg	55.51	50
139	HPV68	E1^E4	45	63	gaatctgttgccgacctac	gtaggtcggcaacagattc	54.14	15
140	HPV68	E1^E4	60	78	ctacagaacaccaccgcga	tcgcggtggtgttctgtag	52.83	20
141	HPV68	E1^E4	44	62	tgaatctgttgccgaccta	taggtcggcaacagattca	52.35	33
142	HPV68	E1^E4	60	78	ctacagaacaccaccgcga	tcgcggtggtgttctgtag	52.83	20
143	HPV68	E1^E4	44	62	tgaatctgttgccgaccta	taggtcggcaacagattca	52.35	33
144	HPV68	E1^E4	11	29	gtgaagtaccactgacgga	tccgtcagtggtacttcac	52.11	30
145	HPV68	E1^E4	40	58	ctactgaatctgttgccga	tcggcaacagattcagtag	51.8	30
146	HPV68	E1^E4	58	76	acctacagaacaccaccgc	gcggtggtgttctgtaggt	51.47	19
147	HPV68	E1^E4	46	64	aatctgttgccgacctaca	tgtaggtcggcaacagatt	51.16	45
148	HPV26	E1^E4	54	72	gagccagtatcaaacgcca	tggcgtttgatactggctc	53.09	29
149	HPV26	E1^E4	54	72	gagccagtatcaaacgcca	tggcgtttgatactggctc	53.09	29
150	HPV26	E1^E4	53	71	tgagccagtatcaaacgcc	ggcgtttgatactggctca	50.7	33
151	HPV26	E1^E4	216	234	cagtcagtggactatacaa	ttgtatagtccactgactg	50.43	46
152	HPV53	E1^E4	268	286	ctggtggagcttcgtgtaa	ttacacgaagctccaccag	56.47	24
153	HPV53	E1^E4	267	285	cctggtggagcttcgtgta	tacacgaagctccaccagg	55.28	26
154	HPV53	E1^E4	210	228	gcagagtgtgtcgcaagga	tccttgcgacacactctgc	53.52	22
155	HPV53	E1^E4	269	287	tggtggagcttcgtgtaac	gttacacgaagctccacca	51.92	24